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3.1 Overview
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VAMP
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2.2.4.3 Sample annotation data
Contents
3. User Manual
Subsections
3.1 Overview
3.1.1 Top-left frame
3.1.2 Bottom-left frame
3.1.3 Main frame
3.2 Basic functions
3.2.1 Data import
3.2.2 Data display
3.2.2.1 Profile View
3.2.2.2 Karyotype View
3.2.2.3 Dot Plot View
3.2.2.4 List View
3.2.2.5 Display additional features
3.2.3 Search
3.2.3.1 Search for arrays
3.2.3.2 Search for elements
3.2.4 Visual rendering
3.2.4.1 Zoom
3.2.4.2 Color codes
3.2.4.3 X and Y scaling
3.2.5 Print
3.2.6 Save and load
3.3 Data analysis
3.3.1 Manual analysis
3.3.2 FrAGL (Frequency of Amplicon, Gain and Loss) view
3.3.3 Finding common alterations among a collection of CGH- array profiles
3.3.4 Clustering profiles
3.3.5 Comparing profiles
3.3.6 Confrontation with sample annotation
3.3.7 Synteny analysis
3.3.8 Confrontation with Genome Annotation
3.3.9 Signal Histogram
3.3.10 Differential Analysis
3.3.11 Correlation Analysis
3.3.11.1 Calculating correlations
3.3.11.2 Visualizing results
3.3.11.3 Exporting the results
2007 - Institut Curie Bioinformatics unit
