Bioinformatics projects at Institut Curie

CGH-array, ChIP-chip, ChIP-Seq, SNP (Genome)
Title	Description
CAPweb	CGH array Analysis Pipeline on the WEB
CLUSTERING	CGH array data Clustering
GLAD	Chromosomal breakpoint detection in array CGH experiments (Gain and Loss Analysis of DNA)
MANOR	CGH array data normalization
MIRAGE	Detection of MInimal Recurrent Alterations in the tumor GEnomes
TUPHYL	Analysis of the phylogeny of tumors
ChIP-chip	ChIP-chip data analysis
MICSA	Transcription factor binding site extraction from ChIP-Seq data by de novo identification of consensus motifs
SVDetect	Detection of genomic structural variations from paired-end or mate-pair sequencing data
ITALICS	An algorithm for normalization and DNA copy number calling for Affymetrix SNP arrays
Gene Expression (Transcriptome)
Title	Description
ITTACA	Integrated Tumor Transcriptome Array and Clinical data Analysis
TRAP	Transcriptome-Array Analysis Pipeline
	New methods for microarray data analysis
Protein Identification (Proteome)
Title	Description
ProMS	Proteome analysis using Mass Spectrometry
Protein-Protein Interaction (Interactome)
Title	Description
DrosoMan	Drosophilia-Human 2 hybrid data analysis
Computational Systems Biology of Cancer (web-page)
Title	Description
SITCON	Modeling SIgnal Transduction induced by EWS/FLI-1 Chimeric ONcogene
BiNoM	BIological NetwOrk Manager
NETI	Network reverse engineering
RB-pathway	Comprehensive map of molecular interactions in RB-pathway
MATBRAC	Mathematical theory of biological robustness with experimental applications in cancer systems biology
ESBIC-D	European Systems Biology Initiative combating complex diseases(finished)
SHARP	A Pathways database for human and fly, Institut Curie node
KernelChip	Kernel methods for joint analysis of microarrays, pathways and clinical data(finished)
Databases
Title	Description
CGHAIA	CGH-array and Analysis Databases for human and mouse
HuTuDB	Human Tumor Databases (Clinical data)
ITTACA	Integrated Tumor Transcriptome Array and Clinical data Analysis
ProMS	Proteome analysis using Mass Spectrometry data
SHARP	A Pathways database for human and fly, Institut Curie node
Genecards	Mirror site of the Genecards functional database
Microarrays	Public repository of Institut Curie microarray related data
ACTUDB	ACTuDB : a database compiling the Array-CGH data of Tumors
Image Analysis
Title	Description
MAIA	Microarray Automatic Image Analysis
User Interfaces
Title	Description
VAMP	Visualisation and Analysis of CGH arrays, transcriptome and other Molecular Profiles
Data Analysis
Title	Description
RAS-APC	Analysis for RAS-APC mouse microarrays
Sequence	On demand sequence fonctional analysis (internal only)
	Time replication data analysis in Neuroblastoma

---