NETI (Network Inference)

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E. coli repressilator
MAPK cascade
Yeast glycolysis
Experimental data

Artificial data: Repressilator (oscillating network in E. coli)

Elowitz MB, Leibler S: A synthetic oscillatory network of transcriptional regulators. Nature, 2000, 403:335-338. SBML module (visit also Cellular Model Repository)
Network Structure (copy and paste from JDesigner)
Model (copy and paste from JDesigner)
Exemplary Time Series used for the Inference
Idealistic time series (100 time points) generated by JDesigner were subsequently distorted by time sampling, leaving 19 time points at random time intervals, and by adding statistical noise with the noise-to-signal level: 0.05. Click on the image to download the time series.
Contact : eugene.novikov@curie.fr | Bioinformatics Home Page : http://bioinfo.curie.fr | Institut Curie Home Page : http://www.curie.fr