Contents

• 1 Overview
• 2 arrayCGH class
• 3 flag class
  • 3.1 Attributes
  • 3.2 Methods
  
  
• 4 qscore class
  • 4.1 Attributes
  • 4.2 Methods
  
  
• 5 Data
  • 5.1 edge
  • 5.2 gradient
  
  
• 6 Graphical representations
  • 6.1 genome.plot
  • 6.2 report.plot
  
  
• 7 Sample MANOR sessions
  • 7.1 array edge
  • 7.2 array gradient
  
  
• 8 Session information
• 9 Supplementary data
• Bibliography