next up previous contents
Next: 8.3 Import XML file Up: 8. Annexes Previous: 8.1 Main configuration XML   Contents


8.2 Sample user configuration XML file


<?xml version='1.0' encoding='iso-8859-1'?>
<CGHConfig>
<AxisBG>ORANGE</AxisBG>
<AxisEastSize>40</AxisEastSize>
<AxisFG>BLACK</AxisFG>
<AxisKaryoDisplayerFont>MonoSpaced:PLAIN:8</AxisKaryoDisplayerFont>
<AxisKaryoNameDisplayerFont>Serif:BOLD:9</AxisKaryoNameDisplayerFont>
<AxisKaryoSmallDisplayerFont>MonoSpaced:BOLD:7</AxisKaryoSmallDisplayerFont>
<AxisLabelFG>BLACK</AxisLabelFG>
<AxisLineFG>LIGHT_GRAY</AxisLineFG>
<AxisNorthSize>45</AxisNorthSize>
<AxisSouthSize>40</AxisSouthSize>
<AxisTranscriptomeFG>GRAY</AxisTranscriptomeFG>
<AxisTranscriptomeLabelFG>GRAY</AxisTranscriptomeLabelFG>
<AxisTranscriptomeLineFG>BLUE</AxisTranscriptomeLineFG>
<AxisTranscriptomeReferenceFG>770033</AxisTranscriptomeReferenceFG>
<AxisTranscriptomeReferenceLabelFG>770033</AxisTranscriptomeReferenceLabelFG>
<AxisTranscriptomeReferenceLineFG>BLUE</AxisTranscriptomeReferenceLineFG>
<AxisTranscriptomeRelativeFG>BLUE</AxisTranscriptomeRelativeFG>
<AxisTranscriptomeRelativeLabelFG>GRAY</AxisTranscriptomeRelativeLabelFG>
<AxisWestSize>90</AxisWestSize>
<AxisXDisplayerFont>Serif:PLAIN:9</AxisXDisplayerFont>
<AxisYCanvasPropertyNameFG>BLACK</AxisYCanvasPropertyNameFG>
<AxisYDisplayerFont>Serif:PLAIN:9</AxisYDisplayerFont>
<AxisYNameDisplayerFont>Serif:PLAIN:9</AxisYNameDisplayerFont>
<AxisYPropertyNameFG>BLUE</AxisYPropertyNameFG>
<BreakpointDashPadding>2</BreakpointDashPadding>
<BreakpointDashWidth>2</BreakpointDashWidth>
<BreakpointFG>RED</BreakpointFG>
.
.
.
<SeachPanelBG>ORANGE</SeachPanelBG>
<SearchPanelButtonBG>WHITE</SearchPanelButtonBG>
<SearchPanelButtonFont>SansSerif:PLAIN:9</SearchPanelButtonFont>
<SmoothingLineFG>BLACK</SmoothingLineFG>
<SmoothingPointFG>BLACK</SmoothingPointFG>
<SmoothingPointWidth>2</SmoothingPointWidth>
<TabBG>WHITE</TabBG>
<TabbedPaneFont>MonoSpaced:BOLD:10</TabbedPaneFont>
<ThresholdMaxYFG>RED</ThresholdMaxYFG>
<ThresholdMinYFG>GREEN</ThresholdMinYFG>
<ThresholdPanelBG>ORANGE</ThresholdPanelBG>
<ThresholdPanelButtonBG>WHITE</ThresholdPanelButtonBG>
<ThresholdPanelLabelFont>SansSerif:PLAIN:9</ThresholdPanelLabelFont>
<Threshold_CGH_MaxY>2.8</Threshold_CGH_MaxY>
<Threshold_CGH_MinY>0.01</Threshold_CGH_MinY>
<Threshold_ChIP-chip_MaxY>16.0</Threshold_ChIP-chip_MaxY>
<Threshold_ChIP-chip_MinY>0.01</Threshold_ChIP-chip_MinY>
<Threshold_SNP_MaxY>8.0</Threshold_SNP_MaxY>
<Threshold_SNP_MinY>0.1</Threshold_SNP_MinY>
<Threshold_TRSREL_MaxY>10.0</Threshold_TRSREL_MaxY>
<Threshold_TRSREL_MinY>0.25</Threshold_TRSREL_MinY>
<Threshold_TRS_MaxY>5000.0</Threshold_TRS_MaxY>
<Threshold_TRS_MinY>-10.0</Threshold_TRS_MinY>
<TitlePanelBG>ffffd0</TitlePanelBG>
<TranscriptomeMergeColorBase>WHITE</TranscriptomeMergeColorBase>
<Utr3FG>ee00</Utr3FG>
<Utr5FG>6600</Utr5FG>
<UtrHeight>2</UtrHeight>
<ViewBG>WHITE</ViewBG>
<ZoomPanelBG>ORANGE</ZoomPanelBG>
<ZoomPanelLabelFont>SansSerif:PLAIN:9</ZoomPanelLabelFont>
<ZoomPanelTextFieldFont>SansSerif:PLAIN:10</ZoomPanelTextFieldFont>
<PropertyAnnotations>
</PropertyAnnotations>
</CGHConfig>



2007 - Institut Curie Bioinformatics unit